VinaLC: Parallel Molecular Docking Program

Biochemical and Biophysical Systems Group
VinaLC version: 1.1.2

cache.h
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1 /*
2 
3  Copyright (c) 2006-2010, The Scripps Research Institute
4 
5  Licensed under the Apache License, Version 2.0 (the "License");
6  you may not use this file except in compliance with the License.
7  You may obtain a copy of the License at
8 
9  http://www.apache.org/licenses/LICENSE-2.0
10 
11  Unless required by applicable law or agreed to in writing, software
12  distributed under the License is distributed on an "AS IS" BASIS,
13  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  See the License for the specific language governing permissions and
15  limitations under the License.
16 
17  Author: Dr. Oleg Trott <ot14@columbia.edu>,
18  The Olson Lab,
19  The Scripps Research Institute
20 
21 */
22 
23 #ifndef VINA_CACHE_H
24 #define VINA_CACHE_H
25 
26 #include <string>
27 #include "igrid.h"
28 #include "grid.h"
29 #include "model.h"
30 
31 struct cache_mismatch {};
32 struct rigid_mismatch : public cache_mismatch {};
34 struct energy_mismatch : public cache_mismatch {};
35 
36 struct cache : public igrid {
37  cache(const std::string& scoring_function_version_, const grid_dims& gd_, fl slope_, atom_type::t atom_typing_used_);
38  fl eval (const model& m, fl v) const; // needs m.coords // clean up
39  fl eval_deriv( model& m, fl v) const; // needs m.coords, sets m.minus_forces // clean up
40 #if 0 // no longer doing I/O of the cache
41  void read(const path& name); // can throw cache_mismatch
42  void write(const path& name) const;
43 #endif
44  void populate(const model& m, const precalculate& p, const szv& atom_types_needed, bool display_progress = true);
45 private:
47  atomv atoms; // for verification
49  fl slope; // does not get (de-)serialized
51  std::vector<grid> grids;
52 
54  template<class Archive>
55  void save(Archive& ar, const unsigned version) const;
56  template<class Archive>
57  void load(Archive& ar, const unsigned version);
58  BOOST_SERIALIZATION_SPLIT_MEMBER()
59 };
60 
61 #endif