model Struct Reference

#include <model.h>

Collaboration diagram for model:

Public Member Functions
void	append (const model &m)
atom_type::t	atom_typing_used () const
sz	num_movable_atoms () const
sz	num_internal_pairs () const
sz	num_other_pairs () const
sz	num_ligands () const
sz	num_flex () const
sz	ligand_degrees_of_freedom (sz ligand_number) const
sz	ligand_longest_branch (sz ligand_number) const
sz	ligand_length (sz ligand_number) const
szv	get_movable_atom_types (atom_type::t atom_typing_used_) const
conf_size	get_size () const
conf	get_initial_conf () const
grid_dims	movable_atoms_box (fl add_to_each_dimension, fl granularity=0.375) const
void	write_flex (const path &name, const std::string &remark) const
void	write_ligand (sz ligand_number, const path &name, const std::string &remark) const
void	write_structure (std::stringstream &out) const
void	write_structure (ofile &out) const
void	write_structure (std::stringstream &out, const std::string &remark) const
void	write_structure (ofile &out, const std::string &remark) const
void	write_model (std::stringstream &out, sz model_number, const std::string &remark) const
void	write_structure (const path &name) const
void	write_model (ofile &out, sz model_number, const std::string &remark) const
void	seti (const conf &c)
void	sete (const conf &c)
void	set (const conf &c)
fl	gyration_radius (sz ligand_number) const
const atom_base &	movable_atom (sz i) const
const vec &	movable_coords (sz i) const
const vec &	atom_coords (const atom_index &i) const
fl	distance_sqr_between (const atom_index &a, const atom_index &b) const
bool	atom_exists_between (const distance_type_matrix &mobility, const atom_index &a, const atom_index &b, const szv &relevant_atoms) const
distance_type	distance_type_between (const distance_type_matrix &mobility, const atom_index &i, const atom_index &j) const
fl	evali (const precalculate &p, const vec &v) const
fl	evale (const precalculate &p, const igrid &ig, const vec &v) const
fl	eval (const precalculate &p, const igrid &ig, const vec &v, const conf &c)
fl	eval_deriv (const precalculate &p, const igrid &ig, const vec &v, const conf &c, change &g)
fl	eval_intramolecular (const precalculate &p, const vec &v, const conf &c)
fl	eval_adjusted (const scoring_function &sf, const precalculate &p, const igrid &ig, const vec &v, const conf &c, fl intramolecular_energy)
fl	rmsd_lower_bound (const model &m) const
fl	rmsd_upper_bound (const model &m) const
fl	rmsd_ligands_upper_bound (const model &m) const
void	verify_bond_lengths () const
void	about () const
vecv	get_ligand_internal_coords () const
vecv	get_ligand_coords () const
vecv	get_heavy_atom_movable_coords () const
void	check_internal_pairs () const
void	print_stuff () const
fl	clash_penalty () const

Private Member Functions
	model ()
const atom &	get_atom (const atom_index &i) const
atom &	get_atom (const atom_index &i)
void	write_context (const context &c, std::stringstream &out) const
void	write_context (const context &c, ofile &out) const
void	write_context (const context &c, ofile &out, const std::string &remark) const
void	write_context (const context &c, const path &name) const
void	write_context (const context &c, const path &name, const std::string &remark) const
fl	rmsd_lower_bound_asymmetric (const model &x, const model &y) const
atom_index	sz_to_atom_index (sz i) const
bool	bonded_to_HD (const atom &a) const
bool	bonded_to_heteroatom (const atom &a) const
sz	find_ligand (sz a) const
void	bonded_to (sz a, sz n, szv &out) const
szv	bonded_to (sz a, sz n) const
void	assign_bonds (const distance_type_matrix &mobility)
void	assign_types ()
void	initialize_pairs (const distance_type_matrix &mobility)
void	initialize (const distance_type_matrix &mobility)
fl	clash_penalty_aux (const interacting_pairs &pairs) const

Private Attributes
vecv	internal_coords
vecv	coords
vecv	minus_forces
atomv	grid_atoms
atomv	atoms
vector_mutable< ligand >	ligands
vector_mutable< residue >	flex
context	flex_context
interacting_pairs	other_pairs
sz	m_num_movable_atoms
atom_type::t	m_atom_typing_used

Friends
struct	non_cache
struct	naive_non_cache
struct	cache
struct	szv_grid
struct	terms
struct	conf_independent_inputs
struct	appender_info
struct	pdbqt_initializer
struct	model_test

Constructor & Destructor Documentation

model::model ( )

inlineprivate

Member Function Documentation

void model::append

(

const model &

m

)

References atom_typing_used(), atoms, coords, flex, flex_context, atom_type::get(), grid_atoms, internal_coords, ligands, m_num_movable_atoms, minus_forces, num_atom_types(), other_pairs, triangular_matrix_index_permissive(), VINA_CHECK, and VINA_FOR_IN.

Referenced by parse_bundle().

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atom_type::t model::atom_typing_used ( ) const

inline

References m_atom_typing_used.

Referenced by about(), append(), eval_intramolecular(), terms::evale_robust(), initialize_pairs(), and szv_grid::szv_grid().

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sz model::num_movable_atoms ( ) const

inline

References m_num_movable_atoms.

Referenced by about(), naive_non_cache::eval(), non_cache::eval(), cache::eval(), non_cache::eval_deriv(), cache::eval_deriv(), eval_intramolecular(), terms::evale(), terms::evali(), get_heavy_atom_movable_coords(), main_procedure(), manifold_phase(), movable_atoms_box(), and non_cache::within().

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sz model::num_internal_pairs

(

)

const

References ligands, and VINA_FOR_IN.

Referenced by about(), and manifold_phase().

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sz model::num_other_pairs ( ) const

inline

References other_pairs.

Referenced by about(), and manifold_phase().

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sz model::num_ligands ( ) const

inline

References ligands.

Referenced by about().

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sz model::num_flex ( ) const

inline

References flex.

Referenced by about(), and write_structure().

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sz model::ligand_degrees_of_freedom ( sz  ligand_number ) const

inline

References ligands.

sz model::ligand_longest_branch

(

sz

ligand_number

)

const

References get_branch_metrics(), branch_metrics::length, and ligands.

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sz model::ligand_length

(

sz

ligand_number

)

const

References branch_metrics::corner2corner, get_branch_metrics(), and ligands.

Referenced by conf_independent_inputs::conf_independent_inputs().

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szv model::get_movable_atom_types

(

atom_type::t

atom_typing_used_

)

const

References atoms, atom_type::get(), has(), m_num_movable_atoms, num_atom_types(), and VINA_FOR.

Referenced by main_procedure().

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conf_size model::get_size

(

)

const

References vector_mutable< T >::count_torsions(), conf_size::flex, flex, conf_size::ligands, and ligands.

Referenced by do_search(), get_initial_conf(), main_procedure(), monte_carlo::many_runs(), monte_carlo::operator()(), manifold::operator()(), refine_structure(), and monte_carlo::single_run().

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conf model::get_initial_conf

(

)

const

References get_size(), ligands, conf::ligands, conf::set_to_null(), and VINA_FOR_IN.

Referenced by do_randomization(), and do_search().

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grid_dims model::movable_atoms_box	(	fl	add_to_each_dimension,
		fl	granularity = 0.375
	)		const

References movable_coords(), num_movable_atoms(), VINA_FOR, and VINA_FOR_IN.

Referenced by terms::evale(), and terms::evale_robust().

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void model::write_flex ( const path &  name, const std::string &  remark  ) const

inline

References flex_context, and write_context().

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void model::write_ligand ( sz  ligand_number, const path &  name, const std::string &  remark  ) const

inline

References ligands, VINA_CHECK, and write_context().

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void model::write_structure ( std::stringstream &  out ) const

inline

References flex_context, ligands, num_flex(), VINA_FOR_IN, and write_context().

Referenced by do_randomization(), write_model(), and write_structure().

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void model::write_structure ( ofile &  out ) const

inline

References flex_context, ligands, num_flex(), VINA_FOR_IN, and write_context().

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void model::write_structure ( std::stringstream &  out, const std::string &  remark  ) const

inline

References write_structure().

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void model::write_structure ( ofile &  out, const std::string &  remark  ) const

inline

References write_structure().

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void model::write_model ( std::stringstream &  out, sz  model_number, const std::string &  remark  ) const

inline

References write_structure().

Referenced by write_all_output().

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void model::write_structure ( const path &  name ) const

inline

References write_structure().

Referenced by write_structure().

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void model::write_model ( ofile &  out, sz  model_number, const std::string &  remark  ) const

inline

References write_structure().

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void model::seti

(

const conf &

c

)

References atoms, internal_coords, ligands, conf::ligands, and vector_mutable< T >::set_conf().

Referenced by manifold_phase().

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void model::sete

(

const conf &

c

)

References atoms, coords, flex, conf::flex, internal_coords, ligands, conf::ligands, vector_mutable< T >::set_conf(), and VINA_FOR_IN.

Referenced by manifold_phase().

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void model::set

(

const conf &

c

)

References atoms, coords, flex, conf::flex, ligands, conf::ligands, and vector_mutable< T >::set_conf().

Referenced by do_randomization(), do_search(), monte_carlo::operator()(), manifold::operator()(), refine_structure(), and write_all_output().

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fl model::gyration_radius

(

sz

ligand_number

)

const

References atoms, coords, EL_TYPE_H, ligands, vec_distance_sqr(), VINA_CHECK, and VINA_RANGE.

Referenced by mutate_conf().

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const atom_base& model::movable_atom ( sz  i ) const

inline

References atoms, and m_num_movable_atoms.

const vec& model::movable_coords ( sz  i ) const

inline

References coords, and m_num_movable_atoms.

Referenced by movable_atoms_box().

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const vec & model::atom_coords

(

const atom_index &

i

)

const

References coords, grid_atoms, atom_index::i, and atom_index::in_grid.

Referenced by assign_bonds(), distance_sqr_between(), and terms::evale_robust().

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fl model::distance_sqr_between	(	const atom_index &	a,
		const atom_index &	b
	)		const

References atom_coords(), and vec_distance_sqr().

Referenced by assign_bonds(), atom_exists_between(), and verify_bond_lengths().

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bool model::atom_exists_between	(	const distance_type_matrix &	mobility,
		const atom_index &	a,
		const atom_index &	b,
		const szv &	relevant_atoms
	)		const

References distance_sqr_between(), distance_type_between(), DISTANCE_VARIABLE, sz_to_atom_index(), and VINA_FOR_IN.

Referenced by assign_bonds().

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distance_type model::distance_type_between	(	const distance_type_matrix &	mobility,
		const atom_index &	i,
		const atom_index &	j
	)		const

References atoms, DISTANCE_FIXED, DISTANCE_VARIABLE, atom_index::i, atom_index::in_grid, and m_num_movable_atoms.

Referenced by assign_bonds(), and atom_exists_between().

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fl model::evali	(	const precalculate &	p,
		const vec &	v
	)		const

References eval_interacting_pairs(), internal_coords, ligands, and VINA_FOR_IN.

Referenced by manifold_phase().

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fl model::evale	(	const precalculate &	p,
		const igrid &	ig,
		const vec &	v
	)		const

References coords, igrid::eval(), eval_interacting_pairs(), and other_pairs.

Referenced by eval(), and manifold_phase().

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fl model::eval	(	const precalculate &	p,
		const igrid &	ig,
		const vec &	v,
		const conf &	c
	)

References coords, eval_interacting_pairs(), evale(), ligands, and VINA_FOR_IN.

Referenced by eval_adjusted().

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fl model::eval_deriv	(	const precalculate &	p,
		const igrid &	ig,
		const vec &	v,
		const conf &	c,
		change &	g
	)

References coords, vector_mutable< T >::derivative(), igrid::eval_deriv(), eval_interacting_pairs_deriv(), change::flex, flex, change::ligands, ligands, minus_forces, other_pairs, and VINA_FOR_IN.

Referenced by quasi_newton_aux::operator()(), and ssd::operator()().

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fl model::eval_intramolecular	(	const precalculate &	p,
		const vec &	v,
		const conf &	c
	)

References interacting_pair::a, atom_typing_used(), atoms, interacting_pair::b, atom::coords, coords, curl(), precalculate::cutoff_sqr(), precalculate::eval_fast(), eval_interacting_pairs(), find_ligand(), atom_type::get(), grid_atoms, ligands, num_atom_types(), num_movable_atoms(), other_pairs, triangular_matrix_index_permissive(), interacting_pair::type_pair_index, vec_distance_sqr(), VINA_FOR, and VINA_FOR_IN.

Referenced by do_search().

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fl model::eval_adjusted	(	const scoring_function &	sf,
		const precalculate &	p,
		const igrid &	ig,
		const vec &	v,
		const conf &	c,
		fl	intramolecular_energy
	)

References scoring_function::conf_independent(), and eval().

Referenced by do_search().

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fl model::rmsd_lower_bound

(

const model &

m

)

const

References rmsd_lower_bound_asymmetric().

Referenced by do_search().

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fl model::rmsd_upper_bound

(

const model &

m

)

const

References atom_type::ad, atoms, coords, atom_type::el, EL_TYPE_H, m_num_movable_atoms, sum(), vec_distance_sqr(), VINA_CHECK, VINA_FOR, and atom_type::xs.

Referenced by do_search().

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fl model::rmsd_ligands_upper_bound

(

const model &

m

)

const

References atom_type::ad, atoms, atom_range::begin, coords, atom_type::el, EL_TYPE_H, atom_range::end, ligands, sum(), vec_distance_sqr(), VINA_CHECK, VINA_FOR_IN, VINA_RANGE, and atom_type::xs.

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void model::verify_bond_lengths

(

)

const

References atoms, atom::bonds, bond::connected_atom_index, distance_sqr_between(), eq_r2(), get_atom(), grid_atoms, bond::length, sz_to_atom_index(), VINA_CHECK, VINA_FOR, VINA_FOR_IN, and VINA_SHOW.

Referenced by write_context().

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void model::about

(

)

const

References atom_typing_used(), num_flex(), num_internal_pairs(), num_ligands(), num_movable_atoms(), num_other_pairs(), and VINA_SHOW.

Referenced by print_stuff().

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vecv model::get_ligand_internal_coords ( ) const

inline

References atom_range::begin, atom_range::end, internal_coords, ligands, VINA_CHECK, and VINA_RANGE.

vecv model::get_ligand_coords ( ) const

inline

References atom_range::begin, coords, atom_range::end, ligands, VINA_CHECK, and VINA_RANGE.

vecv model::get_heavy_atom_movable_coords ( ) const

inline

References atoms, coords, EL_TYPE_H, num_movable_atoms(), and VINA_FOR.

Referenced by ssd::operator()(), monte_carlo::operator()(), manifold::operator()(), and refine_structure().

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void model::check_internal_pairs

(

)

const

References interacting_pair::a, interacting_pair::b, atom_range::begin, atom_range::end, ligands, ligand::pairs, VINA_CHECK, and VINA_FOR_IN.

void model::print_stuff

(

)

const

References about(), atom_type::ad, atoms, atom::bonds, atom_base::charge, atom::coords, coords, atom_type::el, grid_atoms, internal_coords, printnl(), atom_type::sy, VINA_FOR_IN, and atom_type::xs.

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fl model::clash_penalty

(

)

const

References clash_penalty_aux(), ligands, other_pairs, and VINA_FOR_IN.

Referenced by do_randomization().

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const atom& model::get_atom ( const atom_index &  i ) const

inlineprivate

References atoms, grid_atoms, atom_index::i, and atom_index::in_grid.

Referenced by assign_bonds(), assign_types(), conf_independent_inputs::atom_rotors(), bonded_to_HD(), bonded_to_heteroatom(), terms::eval_additive_aux(), conf_independent_inputs::num_bonded_heavy_atoms(), and verify_bond_lengths().

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atom& model::get_atom ( const atom_index &  i )

inlineprivate

References atoms, grid_atoms, atom_index::i, and atom_index::in_grid.

void model::write_context ( const context &  c, std::stringstream &  out  ) const

private

References coords, coords_to_pdbqt_string(), verify_bond_lengths(), and VINA_FOR_IN.

Referenced by write_context(), write_flex(), write_ligand(), and write_structure().

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void model::write_context ( const context &  c, ofile &  out  ) const

private

References coords, coords_to_pdbqt_string(), verify_bond_lengths(), and VINA_FOR_IN.

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void model::write_context ( const context &  c, ofile &  out, const std::string &  remark  ) const

inlineprivate

void model::write_context ( const context &  c, const path &  name  ) const

inlineprivate

References write_context().

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void model::write_context ( const context &  c, const path &  name, const std::string &  remark  ) const

inlineprivate

References write_context().

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fl model::rmsd_lower_bound_asymmetric ( const model &  x, const model &  y  ) const

private

References atoms, coords, atom_type::el, EL_TYPE_H, atom_type::is_hydrogen(), m_num_movable_atoms, max_fl, not_max(), atom_type::same_element(), sum(), vec_distance_sqr(), VINA_CHECK, and VINA_FOR.

Referenced by rmsd_lower_bound().

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atom_index model::sz_to_atom_index ( sz  i ) const

private

References grid_atoms.

Referenced by assign_bonds(), assign_types(), atom_exists_between(), and verify_bond_lengths().

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bool model::bonded_to_HD ( const atom &  a ) const

private

References atom_type::ad, AD_TYPE_HD, atom::bonds, bond::connected_atom_index, get_atom(), and VINA_FOR_IN.

Referenced by assign_types().

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bool model::bonded_to_heteroatom ( const atom &  a ) const

private

References atom::bonds, bond::connected_atom_index, get_atom(), atom_type::is_heteroatom(), and VINA_FOR_IN.

Referenced by assign_types().

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sz model::find_ligand ( sz  a ) const

private

References ligands, and VINA_FOR_IN.

Referenced by eval_intramolecular(), terms::evale_robust(), and initialize_pairs().

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void model::bonded_to ( sz  a, sz  n, szv &  out  ) const

private

References atoms, bond::connected_atom_index, has(), atom_index::i, atom_index::in_grid, and VINA_FOR_IN.

Referenced by bonded_to(), and initialize_pairs().

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szv model::bonded_to ( sz  a, sz  n  ) const

private

References bonded_to().

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void model::assign_bonds ( const distance_type_matrix &  mobility )

private

References atom_type::ad, ad_type_property(), AD_TYPE_SIZE, beads::add(), atom_coords(), atom_exists_between(), atoms, atom::bonds, atom_kind::covalent_radius, beads::data, DISTANCE_ROTOR, distance_sqr_between(), distance_type_between(), DISTANCE_VARIABLE, get_atom(), grid_atoms, max_covalent_radius(), atom_type::optimal_covalent_bond_length(), sqr(), sz_to_atom_index(), vec_distance_sqr(), VINA_FOR, and VINA_FOR_IN.

Referenced by initialize().

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void model::assign_types ( )

private

References atom_type::ad, AD_TYPE_NA, AD_TYPE_OA, atom_type::assign_el(), atoms, bonded_to_HD(), bonded_to_heteroatom(), atom_type::el, EL_TYPE_Br, EL_TYPE_C, EL_TYPE_Cl, EL_TYPE_F, EL_TYPE_H, EL_TYPE_I, EL_TYPE_Met, EL_TYPE_N, EL_TYPE_O, EL_TYPE_P, EL_TYPE_S, EL_TYPE_SIZE, get_atom(), grid_atoms, sz_to_atom_index(), VINA_CHECK, VINA_FOR, atom_type::xs, XS_TYPE_Br_H, XS_TYPE_C_H, XS_TYPE_C_P, XS_TYPE_Cl_H, XS_TYPE_F_H, XS_TYPE_I_H, XS_TYPE_Met_D, XS_TYPE_N_A, XS_TYPE_N_D, XS_TYPE_N_DA, XS_TYPE_N_P, XS_TYPE_O_A, XS_TYPE_O_D, XS_TYPE_O_DA, XS_TYPE_O_P, XS_TYPE_P_P, and XS_TYPE_S_P.

Referenced by initialize().

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void model::initialize_pairs ( const distance_type_matrix &  mobility )

private

References atom_typing_used(), atoms, bonded_to(), DISTANCE_VARIABLE, find_ligand(), has(), ligands, m_num_movable_atoms, num_atom_types(), other_pairs, triangular_matrix_index_permissive(), VINA_FOR_IN, and VINA_RANGE.

Referenced by initialize().

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void model::initialize ( const distance_type_matrix &  mobility )

private

References assign_bonds(), assign_types(), initialize_pairs(), ligands, and VINA_FOR_IN.

Referenced by pdbqt_initializer::initialize().

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fl model::clash_penalty_aux ( const interacting_pairs &  pairs ) const

private

References interacting_pair::a, atoms, interacting_pair::b, coords, pairwise_clash_penalty(), vec_distance_sqr(), and VINA_FOR_IN.

Referenced by clash_penalty().

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Friends And Related Function Documentation

friend struct non_cache

friend

friend struct naive_non_cache

friend

friend struct cache

friend

friend struct szv_grid

friend

friend struct terms

friend

friend struct conf_independent_inputs

friend

friend struct appender_info

friend

friend struct pdbqt_initializer

friend

friend struct model_test

friend

Member Data Documentation

vecv model::internal_coords

private

Referenced by append(), evali(), get_ligand_internal_coords(), pdbqt_initializer::initialize_from_nrp(), print_stuff(), sete(), and seti().

vecv model::coords

private

Referenced by append(), atom_coords(), clash_penalty_aux(), naive_non_cache::eval(), non_cache::eval(), cache::eval(), eval(), non_cache::eval_deriv(), cache::eval_deriv(), eval_deriv(), eval_intramolecular(), evale(), terms::evale(), terms::evale_robust(), terms::evali(), get_heavy_atom_movable_coords(), get_ligand_coords(), gyration_radius(), pdbqt_initializer::initialize_from_nrp(), movable_coords(), print_stuff(), rmsd_ligands_upper_bound(), rmsd_lower_bound_asymmetric(), rmsd_upper_bound(), set(), sete(), non_cache::within(), and write_context().

vecv model::minus_forces

private

Referenced by append(), non_cache::eval_deriv(), cache::eval_deriv(), eval_deriv(), and pdbqt_initializer::initialize_from_nrp().

atomv model::grid_atoms

private

Referenced by append(), assign_bonds(), assign_types(), atom_coords(), naive_non_cache::eval(), non_cache::eval(), non_cache::eval_deriv(), eval_intramolecular(), terms::evale(), terms::evale_robust(), get_atom(), pdbqt_initializer::initialize_from_rigid(), cache::populate(), print_stuff(), sz_to_atom_index(), szv_grid::szv_grid(), and verify_bond_lengths().

atomv model::atoms

private

Referenced by append(), assign_bonds(), assign_types(), bonded_to(), clash_penalty_aux(), conf_independent_inputs::conf_independent_inputs(), distance_type_between(), naive_non_cache::eval(), non_cache::eval(), cache::eval(), non_cache::eval_deriv(), cache::eval_deriv(), eval_intramolecular(), terms::evale(), terms::evale_robust(), terms::evali(), get_atom(), get_heavy_atom_movable_coords(), get_movable_atom_types(), gyration_radius(), pdbqt_initializer::initialize_from_nrp(), initialize_pairs(), movable_atom(), print_stuff(), rmsd_ligands_upper_bound(), rmsd_lower_bound_asymmetric(), rmsd_upper_bound(), set(), sete(), seti(), verify_bond_lengths(), and non_cache::within().

vector_mutable<ligand> model::ligands

private

Referenced by append(), check_internal_pairs(), clash_penalty(), conf_independent_inputs::conf_independent_inputs(), eval(), eval_deriv(), eval_intramolecular(), terms::evale(), terms::evale_robust(), evali(), terms::evali(), find_ligand(), get_initial_conf(), get_ligand_coords(), get_ligand_internal_coords(), get_size(), gyration_radius(), initialize(), pdbqt_initializer::initialize_from_nrp(), initialize_pairs(), ligand_degrees_of_freedom(), ligand_length(), ligand_longest_branch(), num_internal_pairs(), num_ligands(), rmsd_ligands_upper_bound(), set(), sete(), seti(), write_ligand(), and write_structure().

vector_mutable<residue> model::flex

private

Referenced by append(), eval_deriv(), terms::evale(), terms::evali(), get_size(), pdbqt_initializer::initialize_from_nrp(), num_flex(), set(), and sete().

context model::flex_context

private

Referenced by append(), pdbqt_initializer::initialize_from_nrp(), write_flex(), and write_structure().

interacting_pairs model::other_pairs

private

Referenced by append(), clash_penalty(), eval_deriv(), eval_intramolecular(), evale(), initialize_pairs(), and num_other_pairs().

sz model::m_num_movable_atoms

private

Referenced by append(), distance_type_between(), get_movable_atom_types(), pdbqt_initializer::initialize_from_nrp(), initialize_pairs(), movable_atom(), movable_coords(), num_movable_atoms(), rmsd_lower_bound_asymmetric(), and rmsd_upper_bound().

atom_type::t model::m_atom_typing_used

private

Referenced by atom_typing_used().

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The documentation for this struct was generated from the following files:

• model.h
• model.cpp