VinaLC: Parallel Molecular Docking Program

Biochemical and Biophysical Systems Group
VinaLC version: 1.1.2
Public Member Functions | Private Attributes | List of all members
strictly_triangular_matrix< T > Class Template Reference

#include <matrix.h>

Public Member Functions

sz index (sz i, sz j) const
 
sz index_permissive (sz i, sz j) const
 
 strictly_triangular_matrix ()
 
 strictly_triangular_matrix (sz n, const T &filler_val)
 
void resize (sz n, const T &filler_val)
 
void append (const strictly_triangular_matrix< T > &m, const T &filler_val)
 
void append (const matrix< T > &rectangular, const strictly_triangular_matrix< T > &triangular)
 
VINA_MATRIX_DEFINE_OPERATORS sz dim () const
 

Private Attributes

std::vector< T > m_data
 
sz m_dim
 

Constructor & Destructor Documentation

template<typename T>
strictly_triangular_matrix< T >::strictly_triangular_matrix ( )
inline
template<typename T>
strictly_triangular_matrix< T >::strictly_triangular_matrix ( sz  n,
const T &  filler_val 
)
inline

Member Function Documentation

template<typename T>
sz strictly_triangular_matrix< T >::index ( sz  i,
sz  j 
) const
inline

Referenced by strictly_triangular_matrix< distance_type >::index_permissive().

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template<typename T>
sz strictly_triangular_matrix< T >::index_permissive ( sz  i,
sz  j 
) const
inline
template<typename T>
void strictly_triangular_matrix< T >::resize ( sz  n,
const T &  filler_val 
)
inline

Referenced by strictly_triangular_matrix< distance_type >::append(), and nr_update_matrixes().

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template<typename T>
void strictly_triangular_matrix< T >::append ( const strictly_triangular_matrix< T > &  m,
const T &  filler_val 
)
inline

Referenced by strictly_triangular_matrix< distance_type >::append(), and non_rigid_parsed::mobility_matrix().

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template<typename T>
void strictly_triangular_matrix< T >::append ( const matrix< T > &  rectangular,
const strictly_triangular_matrix< T > &  triangular 
)
inline
template<typename T>
VINA_MATRIX_DEFINE_OPERATORS sz strictly_triangular_matrix< T >::dim ( ) const
inline

Referenced by strictly_triangular_matrix< distance_type >::append(), parse_pdbqt_flex(), parse_pdbqt_ligand(), postprocess_branch(), and postprocess_residue().

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Member Data Documentation

template<typename T>
std::vector<T> strictly_triangular_matrix< T >::m_data
private

Referenced by strictly_triangular_matrix< distance_type >::resize().

template<typename T>
sz strictly_triangular_matrix< T >::m_dim
private

Referenced by strictly_triangular_matrix< distance_type >::dim(), strictly_triangular_matrix< distance_type >::index(), and strictly_triangular_matrix< distance_type >::resize().

The documentation for this class was generated from the following file:

LLNL

LLNL-WEB-613932
LLNL-SM-577132

Lawrence Livermore National Laboratory
7000 East Avenue. Livermore, CA 94550

Operated by Lawrence Livermore National Security, LLC, for the
Department of Energy's National Nuclear Security Administration.

NNSA U.S. DOE LLNS